Peer Reviewed Publications

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Journal Articles
Wang Q, Miyakoda M, Yang W, Khillan J, Stachura DL, Weiss MJ, Nishikura K. 2004. Stress-induced
apoptosis associated with null mutation of ADAR1 RNA editing deaminase gene. J Biol Chem. 2004, Feb 6; 279(6): 4952-61.

Stachura DL, Chou ST, Weiss MJ. 2006. An early block to erythro-megakaryocytic development conferred by loss of transcription factor GATA-1. Blood. 2006, Jan. 1; 107(1): 87-97.
 

Bertrand JY*, Kim AD*, Violette EP, Stachura DL, Cisson JL, Traver D. 2007. Definitive hematopoiesis
initiates through a committed erythromyeloid progenitor in the zebrafish embryo. Development. 2007, Dec; 134(23): 4147-56

Stachura DL, Reyes JR, Bartunek P, Paw BH, Zon LI, Traver D. 2009. Zebrafish kidney stromal cell lines
support multilineage hematopoiesis. Blood. 2009 Jul 9; 114(2): 279-89.

Cisson J*, Bertrand JY*, Stachura DL, Traver, D. 2010. Notch signaling distinguishes two waves of
definitive hematopoiesis in the zebrafish embryo. Blood. 2010, Apr 8; 115(14): 2777-83.

Lugo-Villarino G*, Balla KM*, Stachura DL, Banuelos K, Werneck MB, Traver D. 2010. Identification of
dendritic antigen-presenting cells in zebrafish. Proc Natl Acad Sci U S A. 2010, Sep 7;107(36): 15850-5.
 

Balla KM*, Lugo-Villarino G*, Spitsbergen JM, Stachura DL, Hu Y, Banuelos K, Romo-Fewell O, Aroian RV, Traver D. 2010. Eosinophils in the zebrafish: prospective isolation, characterization, and eosinophilia induction by helminth determinants. Blood. 2010 Nov 11;116(19):3944-54.

Feng H, Stachura DL, White RM, Gutierrez A, Zhang L, Sanda T, Jette CA, Testa JR, Neuberg DS,
Langenau DM, Kutok JL, Zon LI, Traver D, Fleming MD, Kanki JP, Look AT. 2010. T-Lymphoblastic
lymphoma cells express high levels of BCL2, S1P1 and ICAM1 leading to a blockade of tumor cell
intravasation. Cancer Cell. 2010 Oct 19;18(4):353-66.

Stachura DL, Svoboda O, Lau RP, Balla KM, Zon LI, Bartunek P, Traver D. 2011. Clonal analysis of
hematopoietic progenitor cells in the zebrafish. Blood. 2011 Aug 4;118(5):1274-82.

Stachura DL*, Svoboda O*, Campbell C, Espin-Palazon R, Lau RP, Zon LI, Bartunek P, Traver D. 2013.
The zebrafish granulocyte colony stimulating factors (Gcsfs): two paralogous cytokines and their roles in hematopoietic development and maintenance. Blood. 2013 Dec 5;122(24):3918-28.

Svoboda O*, Stachura DL*, Machonova O, Pajer P, Brynda J, Zon LI, Traver D, Bartunek P. 2014.
Dissection of vertebrate hematopoiesis using zebrafish thrombopoietin. Blood. 2014 Jul 10;124(2):220-8.
 

Ouyang K*, Leandro Gomez-Amaro R*, Stachura DL*, Tang H, Peng X, Fang X, Traver D, Evans SM,
Chen J. 2014. Loss of IP3R-dependent Ca+2 signaling in thymocytes leads to aberrant development and acute lymphoblastic leukemia. Nature Communications. 2014 Sep 12;5:4814.

Kim AD, Melick CH, Clements WK, Stachura DL, Distel M, Panáková D, MacRae C, Mork LA, Crump JG, Traver D. 2014. Discrete Notch signaling requirements in the specification of hematopoietic stem
cells. EMBO J. 2014 Oct 16;33(20):2363-73.

Espín-Palazón R, Stachura DL, Campbell CA, García-Moreno D, Del Cid N, Kim AD, Candel S, Meseguer J, Mulero V, and Traver D. 2014. Proinflammatory signaling regulates hematopoietic stem cell emergence. Cell. 2014 Nov 20;159(5):1070-85.

Lee Y, Manegold J, Kim A, Pouget C, Stachura DL, Clements W, and Traver. 2014. FGF signaling specifies hematopoietic stem cells through its regulation of somitic Notch signaling. Nat Commun. 2014 Nov 27;5:5583.

Butko E, Distel M, Pouget C, Weijts B, Kobayashi I, Ng K, Mosimann C, Poulain FE, McPherson A, Ni CW, Stachura DL, Del Cid N, Espín-Palazón R, Lawson ND, Dorsky R, Clements WK, Traver D. 2015. Gata2b is a restricted early regulator of hemogenic endothelium in the zebrafish embryo. Development. 2015 Mar 15;142(6):1050-61.

Campbell C, Su T, Lau RP, Shah A, Laurie PC, Avalos B, Aggio J, Harris E, Traver D, Stachura DL. 2015.
Zebrafish embryonic stromal trunk (ZEST) cells support hematopoietic stem and progenitor cell (HSPC) proliferation, survival, and proliferation. Experimental Hematology. 2015 Dec;43(12):1047-61.
 

Harris EY, Keller D, Stachura D, Wolfe G. 2016. Bioinformatics sister courses: an interdisciplinary
collaborative learning framework to teach bioinformatics. Computer Science and Computational
Intelligence. 2016.

Svoboda O, Stachura DL, Machonova O, Zon LI, Traver D, Bartunek P. 2016. Ex vivo tools for the clonal analysis of zebrafish hematopoiesis. Nature Protocols. 2016 Apr 28;11:1007-20.
 

Kim JH, Shinde DN, Reijnders MRF, Hauser NS, Belmonte RL, Wilson GR, Bosch DGM, Bubulya PA, Shashi V, Petrovski S, Stone JK, Park EY, Veltman JA, Sinnema M, Stumpel C, Draaisma JM, Nicolai J, Yntema HG, Lindstrom K, de Vries BBA, Jewett T, Santoro SL, Vogt J, Bachman KK, Seeley AH, Krokosky A, Turner C, Rohena L, Hempel M, Kortüm F, Lessel D, Neu A, Strom TM, Wieczorek D, Bramswig N, Laccone FA, Behunova J, Rehder H, Gordon CT, Rio M, Romana S, Tang S, El-Khechen D, Cho MT, McWalter K, Douglas G, Baskin B, Begtrup A, Funari T, Schoch K, Stegmann APA, Stevens SJC, Zhang DE, Traver D, Yao X, MacArthur DG, Brunner HG, Mancini GM, Myers RM, Owen LB, Lim ST, Stachura DL, Vissers L, Ahn EY. 2016. De novo loss-of-function mutations in SON disrupt RNA-splicing of genes essential for brain development and metabolism, causing an intellectual disability syndrome. The American Journal of Human Genetics. 2016 Sep 1;99(3):711-9.

Cortes M, Chen MJ, Stachura DL, Liu SY, Kwan W, Wright F, Vo LT, Theodore LN, Esain V, Frost IM,
Schlaeger TM, Goessling W, Daley GQ, North TE. 2016. Developmental vitamin D availability impacts
hematopoietic stem cell production. Cell Rep. 2016 Oct 4;17(2):458-468.
 

Gansner JM, Leung AD, Superdock M, Blair MC, Ammerman MB, Durand EM, Barut B, Handin RI, Stachura DL, Lu C, Springer TA, Zon LI. 2017. Sorting zebrafish thrombocyte lineage cells with a cd41 monoclonal antibody enriches hematopoietic stem cell activity. Blood. 2017 Mar 9;129(10):1394-1397.
 

Wolf A*, Aggio J*, Campbell C, Wright F, Marquez G, Traver D, Stachura DL. 2017. Zebrafish caudal
haematopoietic embryonic stromal tissue (CHEST) cells support haematopoiesis. Sci Rep. 2017 Mar
16;7:44644.
 

Kasheta M, Painter CA, Moore FE, Lobbardi R, Bryll A, Freiman E, Stachura D, Rogers AB, Houvras Y,
Langenau DM, Ceol CJ. 2017. Identification and characterization of T reg-like cells in zebrafish. J Exp
Med. 2017 Dec 4;214(12):3519-3530.
 

Berrun AC, Stachura DL. 2017. Development of an in vitro assay to quantitate hematopoietic stem and progenitor cells (HSPCs) in developing zebrafish embryos. J Vis Exp. 2017 Nov 30;(129).
 

Liu C, Han T, Stachura DL, Wang H, Vaisman BL, Kim J, Klemke RL, Remaley AT, Rana TM, Traver D,
Miller YI. 2018. Lipoprotein lipase regulates hematopoietic stem progenitor cell maintenance through DHA supply. Nat Commun. 2018 Apr 3;9(1):1310.

Berrun AC, Harris E, Stachura DL. 2018. isthmin 1 (ism1) is required for normal hematopoiesis in
developing zebrafish. PLoS One. 2018 May 14;13(5):e0196872.

Rost MS, Shestopalov I, Liu Y, Vo AH, Richter CE, Emly SM, Barrett FG, Stachura DL, Holinstat M, Zon
LI, Shavit JA. 2018. Nfe2 is dispensable for early but required for adult thrombocyte formation and
function in zebrafish. Blood Adv. 2018 Dec 11;2(23):3418-3427.

Kim JH, Park EY, Chitayat D, Stachura DL, Schaper J, Lindstrom K, Jewett T, Wieczorek D, Draaisma JM, Sinnema M, Hoeberigs C, Hempel M, Bachman KK, Seeley AH, Stone JK, Kong HK, Vukadin L, Richard A, Shinde DN, McWalter K, Si YC, Douglas G, Lim ST, Vissers LELM, Lemaire M, Ahn EE. 2019. SON haploinsufficiency causes impaired pre-mRNA splicing of CAKUT genes and heterogeneous
renal phenotypes. Kidney Int. 2019 Mar 15. pii: S0085-2538(19)30167-X.

Cajias I*, Belmonte B*, Maciel S*, Thapa S*, Tomasetti S, Aggio J, Stachura DL. 2019. Different
wavelengths of light have no effect on zebrafish fecundity. Science Matters. 2019 Apr 18.
10.19185/matters.201904000001
 

Lewis TR, Smith J, Griffin K, Aguiar S, Rueb KF, Holmberg-Douglas N, Sampson EM, Tomasetti S,
Rodriguez S, Stachura DL*, Arpin CC*. 2020. NHD2-15, a novel antagonist of Growth Factor Receptor-Bound Protein-2 (GRB2), inhibits leukemic proliferation. PLoS One. 2020 Aug 11.

Belmonte RL, Engbretson I, Kim JH, Cajias I, Ahn EY, Stachura DL. 2021. son is necessary for proper
vertebrate blood development. PLoS One. 2021 Feb 25;16(2):e0247489.

Rueb KF, Stachura DL. 2021. Using Flow Cytometry to Detect and Quantitate Altered Blood Formation in the Developing Zebrafish. J Vis Exp. 2021 Apr 29.

Thapa S, Stachura DL. 2021. Deep learning approach for quantification of fluorescently labeled blood cells in Danio rerio (zebrafish). Bioinformatics and Biology Insights. 2021 Jul 15; 15: 1-9.

Namit A*, Dowell W*, Matiasek S, Webster J, Stachura DL. 2022. Pentachlorophenol has significant
adverse effects on hematopoietic and immune system development in zebrafish (Danio rerio). PLoS One. 2022 Mar 25;17(3):e0265618.

*These authors contributed equally
 

Review Articles
Olsen A, Stachura DL, Weiss MJ. 2006. Designer blood: creating hematopoietic lineages from embryonic stem cells. Blood. 2006, Feb 15. Vol 107, No. 4, 1265-1275.
 

Stachura DL and Traver D. 2009. Cellular dissection of zebrafish hematopoiesis, Chapter 11 in Essential Zebrafish Methods: Cell and Developmental Biology. Academic Press for Elsevier Life Sciences, San Diego, CA. Edited By Monte Westerfield, Leonard Zon, and H. Detrich, III. ISBN-13: 978-0-12-374599-6

Stachura DL and Traver D. 2011. Cellular dissection of zebrafish hematopoiesis. Methods Cell Biol.
2011;101:75-110.

Stachura DL and Traver D. 2014. Hematopoietic ontogeny in the axolotl. Blood. 2014 Aug 21;124(8):1204-6.

Kim AD, Stachura DL, Traver D. 2014. Cell signaling pathways involved in hematopoietic stem cell
specification. Experimental Cell Research. 2014 Dec 10; 329(2):227-233.
 

Stachura DL and Traver D. 2016. Cellular dissection of zebrafish hematopoiesis. Methods Cell Biol.
2016;133:11-53.
 

Griffin K, Cajias I, Aguiar S, Tomasetti S, Stachura DL. 2019. How can you tell that stem cells are good
at math? You can watch them multiply and divide! Atlas of Science. 2019 Jan 15.
 

Rubio N, Datar I, Stachura D, Kaplan D, Krueger K. 2019. Cell-based fish: A novel approach to seafood production and an opportunity for cellular agriculture. Frontiers in Sustainable Food Systems, 11 June 2019.
 

Other Articles
Stachura D. 2022. Stem cells and skin rejuvenation after resurfacing treatments. Lipgloss and
Aftershave. 2022 Sep 13.
 

Stachura D. 2022. Flora vs. Fauna. Dermascope. 2022 Dec 20; 9:13.
 

Rueb KF and Stachura DL. 2023. Science2: retinol and stem cell factors. Lipgloss and Aftershave.
2023 May 19.
 

Stachura DL and Rueb KF. 2024. Human stem cell proteins: tools to fight the negative effects of aging skin. Medium. 2024 Apr 3.
 

Metzger H, Thapa S, Stachura DL. 2024. Impact of using Danio rerio (zebrafish) in the middle school
classroom to engage students in authentic novel scientific research investigating unknown effects of e-cigarettes. Medium. 2024 May 21.
 

Stachura DL and Rueb K. 2024. What’s in my skincare product? Cosmetic INCI ingredient lists explained for the consumer. Medium. 2024 Jun 13.
 

Stachura DL and Rueb K. 2024. Demystifying retinoids for skincare: Retinol? Retinal? Retinoic Acid?Retinoids? What’s the difference, and what should I use in my skincare? Medium. 2024 Oct 7.